| 1999-08-07 15:00:02August 7, 1999 | Exeter City vs Hull City | 1 - 0 | Division 3 | St James Park, Exeter |
| 1999-08-10 19:45:16August 10, 1999 | Birmingham City vs Exeter City | 3 - 0 | Worthington Cup | St Andrews, Birmingham |
| 1999-08-14 15:00:34August 14, 1999 | Barnet vs Exeter City | 2 - 2 | Division 3 | Underhill, Barnet |
| 1999-08-21 15:00:51August 21, 1999 | Exeter City vs Rotherham United | 3 - 1 | Division 3 | St James Park, Exeter |
| 1999-08-24 19:45:27August 24, 1999 | Exeter City vs Birmingham City | 1 - 2 | Worthington Cup | St James Park, Exeter |
| 1999-08-28 15:00:03August 28, 1999 | Rochdale vs Exeter City | 0 - 2 | Division 3 | Spotland, Rochdale |
| 1999-08-30 15:00:03August 30, 1999 | Exeter City vs Mansfield Town | 1 - 0 | Division 3 | St James Park, Exeter |
| 1999-09-04 15:00:52September 4, 1999 | Darlington vs Exeter City | 1 - 0 | Division 3 | Feethams, Darlington |
| 1999-09-11 15:00:05September 11, 1999 | Chester FC vs Exeter City | 1 - 1 | Division 3 | Deva Stadium, Chester |
| 1999-09-18 15:00:51September 18, 1999 | Exeter City vs York City | 2 - 1 | Division 3 | St James Park, Exeter |
| 1999-09-25 15:00:49September 25, 1999 | Exeter City vs Macclesfield | 0 - 3 | Division 3 | St James Park, Exeter |
| 1999-10-02 15:00:50October 2, 1999 | Lincoln City vs Exeter City | 1 - 0 | Division 3 | Sincil Bank, Lincoln |
| 1999-10-09 15:00:07October 9, 1999 | Shrewsbury Town vs Exeter City | 1 - 4 | Division 3 | Gay Meadow, Shrewsbury |
| 1999-10-16 15:00:55October 16, 1999 | Exeter City vs Carlisle United | 1 - 1 | Division 3 | St James Park, Exeter |
| 1999-10-19 19:45:20October 19, 1999 | Exeter City vs Swansea City | 1 - 1 | Division 3 | St James Park, Exeter |
| 1999-10-23 15:00:23October 23, 1999 | Macclesfield vs Exeter City | 1 - 0 | Division 3 | Moss Rose, Macclesfield |
| 1999-10-30 15:00:45October 30, 1999 | Exeter City vs Eastwood Town | 2 - 1 | FA Cup | St James Park, Exeter |
| 1999-11-02 19:45:38November 2, 1999 | Plymouth Argyle vs Exeter City | 1 - 0 | Division 3 | Home Park, Plymouth |
| 1999-11-06 15:00:43November 6, 1999 | Exeter City vs Southend United | 0 - 1 | Division 3 | St James Park, Exeter |
| 1999-11-12 19:45:02November 12, 1999 | Halifax Town vs Exeter City | 1 - 0 | Division 3 | Shay The, Halifax |
| 1999-11-20 15:00:29November 20, 1999 | Exeter City vs Aldershot | 2 - 0 | FA Cup | St James Park, Exeter |
| 1999-11-23 19:45:11November 23, 1999 | Exeter City vs Northampton Town | 1 - 2 | Division 3 | St James Park, Exeter |
| 1999-11-27 15:00:54November 27, 1999 | Exeter City vs Torquay United | 3 - 2 | Division 3 | St James Park, Exeter |
| 1999-12-04 15:00:54December 4, 1999 | Hull City vs Exeter City | 4 - 0 | Division 3 | Boothferry Park, Hull |
| 1999-12-10 15:00:19December 10, 1999 | Exeter City vs Everton | 0 - 0 | FA Cup | St James Park, Exeter |
| 1999-12-18 15:00:18December 18, 1999 | Exeter City vs Hartlepool United | 1 - 2 | Division 3 | St James Park, Exeter |
| 1999-12-21 19:45:16December 21, 1999 | Everton vs Exeter City | 1 - 0 | FA Cup | Goodison Park |
| 1999-12-26 15:00:43December 26, 1999 | Cheltenham Town vs Exeter City | 3 - 1 | Division 3 | Whaddon Road, Cheltenham |
| 1999-12-28 15:00:26December 28, 1999 | Exeter City vs Peterborough United | 2 - 2 | Division 3 | St James Park, Exeter |
| 2000-01-03 15:00:34January 3, 2000 | Brighton & Hove Albion vs Exeter City | 4 - 2 | Division 3 | Withdean, Brighton |
| 2000-01-08 15:00:50January 8, 2000 | Exeter City vs Leyton Orient | 1 - 3 | Division 3 | St James Park, Exeter |
| 2000-01-11 19:45:13January 11, 2000 | Exeter City vs Swansea City | 2 - 0 | Auto Windscreens Shield | St James Park, Exeter |
| 2000-01-15 15:00:45January 15, 2000 | Exeter City vs Barnet | 0 - 0 | Division 3 | St James Park, Exeter |
| 2000-01-22 15:00:20January 22, 2000 | Rotherham United vs Exeter City | 5 - 0 | Division 3 | Millmoor, Rotherham |
| 2000-01-25 19:45:19January 25, 2000 | Exeter City vs Torquay United | 1 - 0 | Auto Windscreens Shield | St James Park, Exeter |
| 2000-01-29 15:00:58January 29, 2000 | Exeter City vs Rochdale | 2 - 0 | Division 3 | St James Park, Exeter |
| 2000-02-04 19:45:34February 4, 2000 | Mansfield Town vs Exeter City | 1 - 1 | Division 3 | Field Mill, Mansfield |
| 2000-02-08 19:45:02February 8, 2000 | Leyton Orient vs Exeter City | 4 - 1 | Division 3 | Brisbane Road |
| 2000-02-12 15:00:20February 12, 2000 | Exeter City vs Darlington | 1 - 4 | Division 3 | St James Park, Exeter |
| 2000-02-15 19:45:05February 15, 2000 | Exeter City vs Brentford | 3 - 2 | Auto Windscreens Shield | St James Park, Exeter |
| 2000-02-19 15:00:25February 19, 2000 | Torquay United vs Exeter City | 1 - 0 | Division 3 | Plainmoor, Torquay |
| 2000-02-26 15:00:43February 26, 2000 | York City vs Exeter City | 0 - 0 | Division 3 | Bootham Crescent, York |
| 2000-02-29 19:45:48February 29, 2000 | Bristol City vs Exeter City | 4 - 0 | Auto Windscreens Shield | Ashton Gate, Bristol |
| 2000-03-04 15:00:02March 4, 2000 | Exeter City vs Chester FC | 0 - 2 | Division 3 | St James Park, Exeter |
| 2000-03-07 19:45:17March 7, 2000 | Southend United vs Exeter City | 1 - 2 | Division 3 | Roots Hall, Southend |
| 2000-03-11 12:00:09March 11, 2000 | Exeter City vs Plymouth Argyle | 1 - 1 | Division 3 | St James Park, Exeter |
| 2000-03-14 19:45:36March 14, 2000 | Exeter City vs Bristol City | 1 - 1 | Auto Windscreens Shield | St James Park, Exeter |
| 2000-03-18 15:00:50March 18, 2000 | Northampton Town vs Exeter City | 2 - 1 | Division 3 | Sixfields, Northampton |
| 2000-03-21 19:45:21March 21, 2000 | Exeter City vs Halifax Town | 1 - 0 | Division 3 | St James Park, Exeter |
| 2000-03-25 15:00:10March 25, 2000 | Exeter City vs Cheltenham Town | 1 - 2 | Division 3 | St James Park, Exeter |
| 2000-04-01 15:00:32April 1, 2000 | Hartlepool United vs Exeter City | 2 - 1 | Division 3 | Victoria Park, Hartlepool |
| 2000-04-08 15:00:18April 8, 2000 | Exeter City vs Brighton & Hove Albion | 0 - 0 | Division 3 | St James Park, Exeter |
| 2000-04-15 15:00:52April 15, 2000 | Peterborough United vs Exeter City | 3 - 1 | Division 3 | London Road, Peterborough |
| 2000-04-22 15:00:31April 22, 2000 | Carlisle United vs Exeter City | 0 - 0 | Division 3 | Brunton Park, Carlisle |
| 2000-04-24 15:00:19April 24, 2000 | Exeter City vs Lincoln City | 3 - 0 | Division 3 | St James Park, Exeter |
| 2000-04-29 15:00:17April 29, 2000 | Swansea City vs Exeter City | 3 - 0 | Division 3 | Vetch Field, Swansea |
| 2000-05-06 15:00:19May 6, 2000 | Exeter City vs Shrewsbury Town | 1 - 2 | Division 3 | St James Park, Exeter |
Exeter City
